Hi, first of all thank you for your wonderful script.
I have a similar problem as some other that posted here.
(Nearly?) all the patrols start in combat mode. The patrols are on CSAT and civilians side, players are on NATO side. I am pretty sure the problem was already present without the civilians.
I used some other script (F3 and BTC revive) maybe there is some kind of conflict.
Edit : Here is the link to the mission, if it can help you
https://dl.dropboxusercontent.com/u/42129569/coop14_assault_on_syrta_v1-0.7z